Welcome to my personal site and portfolio. My name is Alejandro and I am a researcher from Barcelona. My area of expertise lies in the application of data science to various fields of scientific research, specifically in the areas of bioinformatics, epidemiology, and computational biomedicine.
Current Role
Currently, I am a postdoctoral researcher at the Barcelona Institute for Global Health (ISGlobal).
In my research, I use a combination of time series analysis, GIS, metagenomics sequencing, and epidemiology to study the underlying drivers of diseases burdening public health systems. A big part of my work performed during my PhD and postdoc has focused on Kawasaki Disease, a pediatric syndrome that affects thousands of children each year and whose etiology is still a mystery after more than 50 years of study.
Apart from this, I also work together with our colleagues in the AIRLAB on the aerobiome, studying the microbial diversity that inhabits the air, both indoors and outdoors (in the urban aerobiome but also in rural areas and up in the atmosphere).
Background
I hold a BSc in Molecular Biotechnology from the University of Barcelona, an MSc in Bioinformatics with a specialization in Data Science from Wageningen University & Research, and a PhD in Biotechnology from the University of Barcelona.
I have previously worked on designing and implementing online courses on the EdX platform for the Educational Staff Development department in WUR, and as a Data Scientist in the R&D department of Dupont Nutrition & Biosciences, where we applied novel machine learning techniques to optimize the protein engineering process.
For a comprehensive overview of my professional experience you can explore my detailed CV.
This site
I built this site with Quarto, an open-source project that lets you create documents, websites, and books using Markdown, R, Python, and HTML.
I treated it as an opportunity to practice modern web development and experiment with HTML/CSS and a bit of JavaScript. A lot of inspiration came from other Quarto websites:
Jeffrey Girard's AffComLab website: I adapted his article.ejs script to automatically list publications.
You can check the source code on GitHub. Feel free to open an issue if you spot anything broken, as I may have overdone it with the CSS/JavaScript tweaks.
Education
Doctoral research carried out at ISGlobal within the Climate and Health group at the PRBB, funded by a Marie Skłodowska-Curie Actions grant through the HELICAL network.
Thesis: Atmospheric characterization and time-series analysis of the impact of environmental factors on disease onset. Read the dissertation.
During my MSc in Bioinformatics at Wageningen University & Research, I explored a wide range of computational biology topics: from R and (especially) Python programming, to systems biology, multiple omics fields, and data science subjects like machine learning, algorithmic development, and the usage of High Performance Computing (HPC).
For my thesis, I developed deep learning models to predict the subcellular localization of proteins, with an emphasis on making these models less of a black box. The thesis can be found here, and the GitHub repo is available here.
I studied Biotechnology at Universitat de Barcelona, where I built a strong base in molecular biology, microbiology, and biochemistry, along with lab experience. By my final year I was already leaning toward the computational side of biology.
My thesis focused on transcriptomics, carrying out a meta-analysis of differential expression methods for microarray data.